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Then, it calculates correlation matrix of genes", "topics": [ "calculate_cor_mat" ] }, { "page": "calculate_normalized_ratio", "title": "Calculate cell scores based on number of genes", "topics": [ "calculate_normalized_ratio" ] }, { "page": "correct_gene_symbols", "title": "Process the cell markers names", "topics": [ "correct_gene_symbols" ] }, { "page": "enrich_genes", "title": "Performs parallel function on two lists", "topics": [ "enrich_genes" ] }, { "page": "filter_correlation", "title": "Filter the genes based on specific correlation threshold", "topics": [ "filter_correlation" ] }, { "page": "filter_list", "title": "Process the cell markers that overlap between the cell markers and scRNA matrix", "topics": [ "filter_list" ] }, { "page": "fisher_test", "title": "Performs fisher exact test to get the significant overlap between genes for cell type assignment", "topics": [ "fisher_test" ] }, { "page": "match_characters", "title": "Process the cell markers that pass specific threshold in the gene correlation matrix", "topics": [ "match_characters" ] }, { "page": "phyper_test", "title": "Performs phyper test to get the significant overlap between genes for cell type assignment", "topics": [ "phyper_test" ] }, { "page": "process_clus", "title": "Gets the associated cell types using correlation-based approach", "topics": [ "process_clus" ] }, { "page": "process_database", "title": "Process the database for the sctype approach", "topics": [ "process_database" ] }, { "page": "process_markers", "title": "Process the cell markers database and return the processed list", "topics": [ "process_markers" ] }, { "page": "sccca", "title": "Run the pipeline for the cell type assignment", "topics": [ "sccca" ] }, { "page": "sctype", "title": "Run the sctype approach as it's implemented by Ianevski, A., Giri, A.K. and Aittokallio, T.", "topics": [ "sctype" ] } ], "_rundeps": [ "abind", "askpass", "base64enc", "BH", "bitops", "bslib", "cachem", "caTools", "cli", "cluster", 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