Package: sccca 0.1.1
sccca: Single-Cell Correlation Based Cell Type Annotation
Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) <doi:10.2307/2982890>).
Authors:
sccca_0.1.1.tar.gz
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sccca_0.1.1.tgz(r-4.4-any)sccca_0.1.1.tgz(r-4.3-any)
sccca_0.1.1.tar.gz(r-4.5-noble)sccca_0.1.1.tar.gz(r-4.4-noble)
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sccca.pdf |sccca.html✨
sccca/json (API)
# Install 'sccca' in R: |
install.packages('sccca', repos = c('https://mohmedsoudy.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 months agofrom:bb077ac514. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 09 2024 |
R-4.5-win | OK | Nov 09 2024 |
R-4.5-linux | OK | Nov 09 2024 |
R-4.4-win | OK | Nov 09 2024 |
R-4.4-mac | OK | Nov 09 2024 |
R-4.3-win | OK | Nov 09 2024 |
R-4.3-mac | OK | Nov 09 2024 |
Exports:calculate_cor_matcalculate_normalized_ratiocorrect_gene_symbolsenrich_genesfilter_correlationfilter_listfisher_testmatch_charactersphyper_testprocess_clusprocess_databaseprocess_markersscccasctype
Dependencies:abindaskpassbase64encBHbitopsbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolshereHGNChelperhighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenlifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslopenxlsxparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsnesassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilssplitstackshapestringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzipzoo