Package: sccca 0.1.1

sccca: Single-Cell Correlation Based Cell Type Annotation

Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) <doi:10.2307/2982890>).

Authors:Mohamed Soudy [aut, cre], Sophie LE BARS [aut], Enrico Glaab [aut]

sccca_0.1.1.tar.gz
sccca_0.1.1.zip(r-4.7-any)sccca_0.1.1.zip(r-4.6-any)sccca_0.1.1.zip(r-4.5-any)
sccca_0.1.1.tgz(r-4.6-any)sccca_0.1.1.tgz(r-4.5-any)
sccca_0.1.1.tar.gz(r-4.7-any)sccca_0.1.1.tar.gz(r-4.6-any)
sccca_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
sccca/json (API)

# Install 'sccca' in R:
install.packages('sccca', repos = c('https://mohmedsoudy.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 stars 206 downloads 14 exports 147 dependencies

Last updated from:bb077ac514. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK218
source / vignettesOK233
linux-releaseOK228
macos-releaseOK162
macos-oldrelOK137
windows-develOK171
windows-releaseOK140
windows-oldrelOK127
wasm-releaseOK140

Exports:calculate_cor_matcalculate_normalized_ratiocorrect_gene_symbolsenrich_genesfilter_correlationfilter_listfisher_testmatch_charactersphyper_testprocess_clusprocess_databaseprocess_markersscccasctype

Dependencies:abindaskpassbase64encBHbitopsbslibcachemcaToolscliclustercodetoolscommonmarkcowplotcpp11crosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolshereHGNChelperhighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemimeminiUInlmeopensslopenxlsxotelparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppThreadRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS7sassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilssplitstackshapestringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzipzoo