UniprotR - Retrieving Information of Proteins from Uniprot
Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.
Last updated 2 years ago
5.85 score 58 stars 82 scripts 872 downloadsScRNAIMM - Performing Single-Cell RNA-Seq Imputation by Using Mean/Median Imputation
Performing single-cell imputation in a way that preserves the biological variations in the data. The package clusters the input data to do imputation for each cluster, and do a distribution check using the Anderson-Darling normality test to impute dropouts using mean or median (Yazici, B., & Yolacan, S. (2007) <DOI:10.1080/10629360600678310>).
Last updated 1 years ago
2.70 score 123 downloadsDFD - Extract Drugs from Differential Expression Data
Extract Drugs from Differential Expression Data using the Connectivity Map (CMAP) Approach and Library of Integrated Network-Based Cellular Signatures (LINCS) Database.
Last updated 1 years ago
2.70 score 1 stars 161 downloadsggaligner - Visualizing Sequence Alignment by Generating Publication-Ready Plots
Providing publication-ready graphs for Multiple sequence alignment. Moreover, it provides a unique solution for visualizing the multiple sequence alignment without the need to do the alignment in each run which is a big limitation in other available packages.
Last updated 1 years ago
2.70 score 1 scripts 149 downloadsORTSC - Connects to Google Cloud API for Label Detection
Connects to Google cloud vision <https://cloud.google.com/vision> to perform label detection and repurpose this feature for image classification.
Last updated 4 years ago
2.70 score 1 stars 146 downloadsResearchAssociate - Retrieving Publications from PubMed Database Based on User Query
Connects to Pubmed <https://pubmed.ncbi.nlm.nih.gov/> to retrieve publications related to user-defined search query.
Last updated 3 days ago
archivedpackagesr-universe
1.70 score 5 stars 174 downloadssccca - Single-Cell Correlation Based Cell Type Annotation
Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) <DOI:10.2307/2982890>).
Last updated 8 months ago
1.30 score 149 downloadsMERO - Performing Monte Carlo Expectation Maximization Random Forest Imputation for Biological Data
Perform missing value imputation for biological data using the random forest algorithm, the imputation aim to keep the original mean and standard deviation consistent after imputation.
Last updated 2 years ago
1.08 score 12 scripts 231 downloads