UniprotR - Retrieving Information of Proteins from Uniprot

Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.

Last updated 2 years ago

6.38 score 60 stars 1 dependents 89 scripts 779 downloads

ScRNAIMM - Performing Single-Cell RNA-Seq Imputation by Using Mean/Median Imputation

Performing single-cell imputation in a way that preserves the biological variations in the data. The package clusters the input data to do imputation for each cluster, and do a distribution check using the Anderson-Darling normality test to impute dropouts using mean or median (Yazici, B., & Yolacan, S. (2007) <DOI:10.1080/10629360600678310>).

Last updated 1 years ago

2.70 score 216 downloads

DFD - Extract Drugs from Differential Expression Data

Extract Drugs from Differential Expression Data using the Connectivity Map (CMAP) Approach and Library of Integrated Network-Based Cellular Signatures (LINCS) Database.

Last updated 1 years ago

2.70 score 1 stars 1 scripts 178 downloads

ggaligner - Visualizing Sequence Alignment by Generating Publication-Ready Plots

Providing publication-ready graphs for Multiple sequence alignment. Moreover, it provides a unique solution for visualizing the multiple sequence alignment without the need to do the alignment in each run which is a big limitation in other available packages.

Last updated 2 years ago

2.70 score 1 scripts 152 downloads

ORTSC - Connects to Google Cloud API for Label Detection

Connects to Google cloud vision <https://cloud.google.com/vision> to perform label detection and repurpose this feature for image classification.

Last updated 4 years ago

2.70 score 1 stars 185 downloads

sccca - Single-Cell Correlation Based Cell Type Annotation

Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) <DOI:10.2307/2982890>).

Last updated 11 months ago

1.30 score 161 downloads

MERO - Performing Monte Carlo Expectation Maximization Random Forest Imputation for Biological Data

Perform missing value imputation for biological data using the random forest algorithm, the imputation aim to keep the original mean and standard deviation consistent after imputation.

Last updated 2 years ago

1.23 score 17 scripts 238 downloads